Archives de tags | genomique

Nicolas Pollet

Jan21

portrait_npChargé de Recherche

Membre de : Polygnome

Tel. 01 69 82 37 10

Fax 33 1 69 82 37 36

Nicolas.Pollet@egce.cnrs-gif.fr

 

Thèmes de recherche

Génomique – Amphibiens – Evolution – Xénope – Bioinformatique – Développement

Capture d’écran 2015-01-22 à 14.17.06

Capture d’écran 2015-01-26 à 18.39.50

Capture d’écran 2015-01-26 à 19.00.50

Publications

2021

  1. Gut microbial ecology of Xenopus tadpoles across life stages. Scalvenzi, T., Clavereau, I., Bourge, M. and Pollet, N. (2021) 10.24072/pcjournal.53 – Peer Community Journal, Volume 1 (2021), article no. e41.
  2. Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri. Ducret, V., Richards, A.J., Videlier, M., Scalvenzi, T., Moore, K.A., Paszkiewicz, K., Bonneaud, C., Pollet, N. and Herrel, A. (2021) BMC Genomics  22(1):204. doi: 10.1186/s12864-021-07517-1.
  3. Draft nuclear genome and complete mitogenome of the Mediterranean corn borer, Sesamia nonagrioides, a major pest of maize. Muller, H., Ogereau, D., Da-Lage, J.L., Capdevielle, C., Pollet, N., Fortuna, T., Jeannette, R., Kaiser, L. and Gilbert, C. (2021) doi: 10.1093/g3journal/jkab155 G3 (Bethesda).  11(7):jkab155.

2020

  1. A new method for long-read sequencing of animal mitochondrial genomes: application to the identification of equine mitochondrial DNA variants. Dhorne-Pollet, S., Barrey, E. and Pollet, N. (2020) BMC Genomics 21(1):785. doi: 10.1186/s12864-020-07183-9.
  2. Evolutionary Dynamics of the Repetitive DNA in the Karyotypes of Pipa carvalhoi and Xenopus tropicalis (Anura, Pipidae). (2020) Zattera ML, Gazolla CB, Soares AA, Gazoni T, Pollet N, Recco-Pimentel SM, Bruschi DP. Front Genet.  11:637. doi: 10.3389/fgene.2020.00637. eCollection 2020.
  3. Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina-Blastocystis Stramenopile Lineage. (2020) Yubuki N, Galindo LJ, Reboul G, López-García P, Brown MW, Pollet N, Moreira D. Mol Biol Evol.  37(3):651-659. doi: 10.1093/molbev/msz250.

2017

  1. Bronchain, O. J., A. Chesneau, A. H. Monsoro-Burq, P. Jolivet, E. Paillard, T. S. Scanlan, B. A. Demeneix, L. M. Sachs & N. Pollet (2017) Implication of thyroid hormone signaling in neural crest cells migration: Evidence from thyroid hormone receptor beta knockdown and NH3 antagonist studies. Molecular and Cellular Endocrinology, 439, 233-246. 10.1016/j.mce.2016.09.007.
  2. Maharana, S. K., N. Pollet & G. Schlosser (2017) Identification of novel cis-regulatory elements of Eya1 in Xenopus laevis using BAC recombineering. Scientific Reports, 7, 11. 10.1038/s41598-017-15153-7.
  3. Spirhanzlova, P., S. Dhorne-Pollet, J. S. Fellah, C. Da Silva, T. Tlapakova, K. Labadie, J. Weissenbach, J. Poulain, T. Jaffredo, P. Wincker, V. Krylov & N. Pollet (2017) Construction and characterization of a BAC library for functional genomics in Xenopus tropicalis. Developmental Biology, 426, 255-260. 10.1016/j.ydbio.2016.05.015.

2016

  1. Spirhanzlova, P., Dhorne-Pollet, S., Fellah, J.S., Da Silva, C., Tlapakova, T., Labadie, K., Weissenbach, J., Poulain, J., Jaffredo, T., Wincker, P., Krylov, V., Pollet, N. (2016) Construction and characterization of a BAC library for functional genomics in Xenopus tropicalis. Dev Biol. in press. doi: 10.1016/j.ydbio.2016.05.015.
  2. Bronchain, O.J., Chesneau, A., Monsoro-Burq, A.-H., Jolivet, P., Paillard, E., Scanlan, T.S., Demeneix, B.A., Sachs, L.M., Pollet, N. (2016) Implication of thyroid hormone signaling in neural crest cells migration: Evidence from thyroid hormone receptor beta knockdown and NH3 antagonist studies. Molecular and Cellular Endocrinology in press.
  3. Tissier, J., J. C. Rage, R. Boistel, V. Fernandez, N. Pollet, G. Garcia & M. Laurin (2016) Synchrotron analysis of a ‘mummified’ salamander (Vertebrata: Caudata) from the Eocene of Quercy, France. Zoological Journal of the Linnean Society, 177, 147-164.

2015

  1. Vouillot, L., Thélie, A. and Pollet N. (2015) Comparison of T7E1 and Surveyor Mismatch Cleavage Assays To Detect Mutations Triggered by Engineered Nucleases. G3 (Bethesda). doi: 10.1534/g3.114.015834.
  2. Colombo, B.M., Scalvenzi, T., Benlamara, S. and Pollet, N. (2015) Microbiota and mucosal immunity in amphibians. Front Immunol.  6:111. doi: 10.3389/fimmu.2015.00111.
  3. Tissier, J., Rage, J.C., Boistel, R., Fernandez, V., Pollet, N., G Garcia, G. and Laurin, M. (2015) Synchrotron analysis of a ‘mummified’ salamander (Vertebrata: Caudata) from the Eocene of Quercy, France. Zoological Journal of the Linnean Society 177:147-164 doi: 10.1111/zoj.12341.

2014

  1. Plouhinec, J.L., Roche, D.D., Pegoraro, C., Figueiredo, A.L., Maczkowiak, F., Brunet, L.J., Milet, C., Vert, J.P., Pollet, N., Harland, R.M., Monsoro-Burq, A.H. (2014) Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers. Dev. Biol. 386:461-72.
  2. Scalvenzi, T. and Pollet, N. (2014) Insights on genome size evolution from a miniature inverted repeat transposon driving a satellite DNA. Mol. Phyl. Evol. 81:1-9

2013

  1. Boistel, R., Aubin, T., Cloetens, P., Peyrin, F., Scotti, T., Herzog, P., Gerlach, J., Pollet, , Aubry, J.F. (2013) How minute sooglossid frogs hear without a middle ear. Proc Natl Acad Sci U S A 110:15360-4.
  2. Dhorne-Pollet, S., Thélie, A., Pollet, N. (2013) Validation of novel reference genes for RT-qPCR studies of gene expression in Xenopus tropicalis during embryonic and post-embryonic development. Dev Dyn. 242:709-17.

2012

  1. Sinzelle, L., Thuret, R., Hwang, H.Y., Herszberg, B., Paillard, E., Bronchain, O.J., Stemple, D.L., Dhorne-Pollet, S. and Pollet, N. (2012) Characterization of a novel Xenopus tropicalis cell line as a model for in vitro Genesis 50:316-24.
  2. Planson, A.G., Carbonell, P., Paillard, E., Pollet, N. and Faulon, J.L. (2012) Compound toxicity screening and structure-activity relationship modeling in Escherichia coli. Biotechnol Bioeng 109:846-50 doi : 10.1002/bit.24356
  3. Parain, K., Mazurier, N., Bronchain, O.J., Borday, C., Cabochette, P., Chesneau, A., Colozza, G., el Yakoubi, W., Hamdache, J., Gilchrist, M., Pollet, N. and Perron, M. (2012). A large scale screen for neural stem cell markers in Xenopus retina. Developmental Neurobiology. 72:491-506.
  4. Tempel, S., Pollet, N. and Tahi, F. (2012) ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins. BMC Bioinformatics. 13:246.

2011

  1. Demattei, M-V., Hedhili, S., Sinzelle, L., Bressac, C., Casteret, S., Moiré, N., Cambefort, J., Thomas, X., Pollet, N., Gantet, P., and Bigot, Y. (2011) Nuclear Importation of Mariner Transposases among Eukaryotes : Motif Requirements and Homo-Protein Interactions. PLoS ONE 6(8) : e23693. doi:10.1371/journal.pone.0023693
  2. Boistel, R., Aubin, T., Cloetens, P., Langer, M., Gillet, B., Josset, P., Pollet, N. and Herrel, A. (2011) Whispering to the Deaf : Communication by a Frog without External Vocal Sac or Tympanum in Noisy Environments. PLoS ONE 6(7) : e22080. doi:10.1371/journal.pone.0022080
  3. Sinzelle, L., Carradec, Q., Paillard, E., Bronchain, O.J. and Pollet, N. (2011) Characterization of a Xenopus tropicalis Endogenous Retrovirus with Developmental and Stress-Dependent Expression. J Virol 85:2167-2179.
  4. Pegoraro, C., Pollet, N. and Monsoro-Burq AH. (2011) Tissue-specific expression of Sarcoplasmic/Endoplasmic Reticulum Calcium ATPases (ATP2A/SERCA) 1, 2, 3 during Xenopus laevis development. Gene Expr Patterns 11:122-8.

2010

  1. Hellsten, U., Harland, R.M., Gilchrist, M.J., Hendrix, D., Jurka, ., Kapitonov, V., Ovcharenko, I., Putnam, N., Shu, S., Taher, L., Blitz, I., Blumberg, B., Dichann, D., Dubchak, I., Fletcher, R., Gerhard, D., Goodstein, D., Graves, T., Grigoriev, I., Grimwood, J., Kawashima, T., Lindquist, E., Mead, P., Mitros, T., Ota, Y., Poliakov, A., Pollet, N., Robert, J., Salamov, A., Sater, A., Schmutz, J., Terry, A., Vize, P., Warren, W., Wells, D., Wills, A., Zimmerman, L., Grainger, R., Grammer, T., Khokha, M., Richardson, P. and Rokhsar, D. (2010) The genome of the western clawed frog Xenopus tropicalis. Science 328:633-6.
  2. Pollet, N. (2010) Expression of immune genes during metamorphosis of Xenopus: a survey. Front Biosci. 15:348-58.
  3. Ymlahi-Ouazzani, Q., Bronchain, O.J., Paillard, E., Ballagny, C., Chesneau, A., Jadaud, A., Mazabraud, A. and Pollet, N. (2010) Reduced levels of survival motor neuron protein leads to aberrant motoneuron growth in a Xenopus model of muscular atrophy, Neurogenetics. 11 :27-40.
  4. Smelty, P., Marchal, C., Renard, R., Sinzelle, L., Pollet, N., Dunon, D., Jaffredo, T., Sire, J-Y, Fellah, J.S. (2010) Identification of the pre–T-cell receptor α chain in nonmammalian vertebrates challenges the structure–function of the molecule. Proc Natl Acad Sci U S A 107:19991-19996.

Photos

Ecole de terrain Ecotrop 2019 « Hommes et biodiversité » à Mbalmayo au Cameroun.

Elsa, Petit

Avr11

DEEIT_PAGE_ID_PetitPole: Ecologie et Evolution

Equipe: DEEIT

Maitre de conférences a Paris Sud 11

Email: elsa.petit AT u-psud.fr

Téléphone: +33 (0)1 69 82 37 48

Fax: +33 1 69 82 37 36

CV_Elsa Petit

Recherche: Génomique évolutive des maladies infectieuses
Ma thématique de recherche concerne l’écologie et l’évolution des maladies infectieuses. Mon projet actuel vise à comprendre les caractéristiques génétiques qui font que certaines espèces d’insectes vecteurs de la maladie de Chagas tirent avantage des changements anthropogéniques. Ce projet est important pour comprendre la dynamique de la biodiversité dans un environnement modifié par l’homme.

Enseignement:
J’enseigne a Paris Sud dans le département de biologie animale.

Publications:

  1. E. Petit, M. V. Coppi, J. C. Hayes, A. Tolonen, T. Warnick, W. G. Latouf, D. Amisano, A. Biddle, S. Mukherjee, N. Ivanova, A. Lykidis, M. Land, L. Hauser, N. Kyrpides, B. Henrissat, D. Schnell, G. Church, S. B. Leschine and J. L. Blanchard. (ACCEPTE). Clostridium phytofermentans genome and transcriptome: A window on the direct conversion of plant biomass to fuels. PLoS ONE
  2. E. Petit and W. D. Gubler. (SOUS PRESSE). Black foot disease of grapevine. Compendium of Grapevine Diseases. Book Chapter.
  3. G. Aguileta, D. M. de Vienne, O.N. Ross, M. E. Hood, T. Giraud, E. Petit and T. Gabaldón. 2014. High variability of mitochondrial gene order in basidiomycetes. Genome Biology and Evolution 6(2): 451–465.
  4. A. Tolonen, E. Petit, J. L. Blanchard, T. Warnick, and S. B. Leschine. 2013. Technologies to study plant biomass fermentation using the model bacterium Clostridium phytofermentans. Biol. Convers. Biomass Fuels Chem. Explor. Nat. Util. Syst. Chapter 7.
  5. F. Abdul-Rahman, E. Petit, J. L. Blanchard. 2013. The distribution of polyhedral bacterial microcompartments suggests frequent horizontal transfer and operon reassembly. Journal of Phylogenetics & Evolutionary Biology 1:118.
  6. B. Büker, E. Petit, D. Begerow, and M.E. Hood. 2013. Experimental hybridization and backcrossing reveal forces of reproductive isolation in Microbotryum. BMC Evolutionary Biology 13:224.
  7. B.P.S. Nieuwenhuis, S. Billiard, S. Vuilleumier, E. Petit, M. E. Hood, and T. Giraud. 2013. Evolutionary advantages and drawbacks of uni- versus bifactoriality in mating type determinism. Heredity 1-11.
  8. A. K. Gibson, E Petit, J. Mena-Ali, B. Oxelman, and M. E. Hood. 2013. Life-history strategy defends against disease and affects physiological resistance. Ecology and Evolution 3: 1741-1750.
  9. M. E. Hood, E. Petit, and T. Giraud. 2013. Extensive divergence between mating type chromosomes of the anther-smut fungus. Genetics 193: 309–315.
  10. E. Petit, W. G. LaTouf, M. V. Coppi, T. A. Warnick, D. Currie, I. Romashko, S. Deshpande, D. J. Schnell, S. B. Leschine, and J. L. Blanchard. 2013. Involvement of a bacterial microcompartment in the metabolism of fucose and rhamnose by Clostridium phytofermentans. PLoS ONE e54337.
  11. E. Petit, T. Giraud, D. M. de Vienne, M. A. Coelho, G. Aguileta, J. Amselem, J. Kreplak, J. Poulain, F. Gavory, P. Wincker, S. K. Young, C. Cuomo, M.H. Perlin, and M. E. Hood. 2012. Linkage to the mating-type locus across the genus Microbotryum: Insights into non-recombining chromosomes. Evolution 66: 3519–3533.
  12. E. Petit, E. Chung, A. Pedersen, J. Antonovics and M.E. Hood. 2012. Variation in resistance to multiple pathogen species: anther-smuts of Silene uniflora. Ecology and Evolution 2: 2304–2314. (COVER IMAGE)
  13. F. Horns, E. Petit, R. Yockteng, M. E. Hood. 2012. Patterns of repeat-induced point mutation in transposable elements of basidiomycete fungi. Genome Biology and Evolution 4: 240-247.
  14. E. Petit, E. Barriault, K. Baumgartner, W. Wilcox, P. Rolshausen. 2011. Cylindrocarpon species associated with black-foot of grapevine in the Northeastern United States and Southeastern Canada. American Journal of Viticulture and Enology 62: 177-183.
  15. E. Petit and W. D. Gubler. 2007. First report of Cylindrocarpon liriodendri causing black foot disease of grapevine in California. Plant Disease 91 (8): 1060.
  16. E. Petit and W. D. Gubler. 2006. Influence of Glomus intraradices on black foot disease caused by Cylindrocarpon macrodidymum on Vitis rupestris under controlled conditions. Plant Disease 90 (12): 1481.
  17. E. Petit and W. D. Gubler. 2005. Characterization of Cylindrocarpon species, the cause of black foot disease of grapevines in California. Plant Disease 89 (10): 1051.
  18. W. D. Gubler, K. Baumgartner, G. T. Browne, A. Eskalen, S. R. Latham, E. Petit, and L. A. Bayramian. 2004. Root diseases of grapevines in California and their control. Australasian Plant Pathology 33 (2): 157-165.
  19. M. L. Gleason, E. Petit, S. N. Wegulo, and H. G. Taber. 1999. Evaluation of SkyBit data input to the Melcast disease-warning system for control of watermelon anthracnose. Fungicide and Nematicide Tests 55:289.